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  • Hiller, K.; Grote, A.; Maneck, M.; Münch, R.; Jahn, D.
    JVirGel 2.0: computational prediction of proteomes separated via two-dimensional gel electrophoresis under consideration of membrane and secreted proteins.
    Bioinformatics, 2006, 22, 2441-2443 doi url
  • Hiller, K.; Schobert, M.; Hundertmark, C.; Jahn, D. & Münch, R.
    JVirGel: Calculation of virtual two-dimensional protein gels.
    Nucleic Acids Res, 2003, 31, 3862-3865
  • Grote, A.; Hiller, K.; Scheer, M.; Münch, R.; Nörtemann, B.; Hempel, D.C. & Jahn, D.
    JCat: a novel tool to adapt codon usage of a target gene to its potential expression host.
    Nucleic Acids Res, 2005, 33, W526-W531 doi url
  • Hiller, K.; Grote, A.; Scheer, M.; Münch, R. & Jahn, D.
    PrediSi: prediction of signal peptides and their cleavage positions.
    Nucleic Acids Res, 2004, 32, W375-9 doi url
  • Münch, R.; Hiller, K.; Barg, H.; Heldt, D.; Linz, S.; Wingender, E. & Jahn, D.
    PRODORIC: prokaryotic database of gene regulation.
    Nucleic Acids Res, 2003, 31, 266-269
  • Münch, R.; Hiller, K.; Grote, A.; Scheer, M.; Klein, J.; Schobert, M. & Jahn, D.
    Virtual Footprint and PRODORIC: an integrative framework for regulon prediction in prokaryotes.
    Bioinformatics, 2005, 21, 4187-9 doi url
  • Schluesener, D.; Fischer, F.; Kruip, J.; Rögner, M. & Poetsch, A.
    Mapping the membrane proteome of Corynebacterium glutamicum.
    Proteomics, 2005, 5, 1317-30 doi url
  • Babnigg, G. & Giometti, C.S.
    GELBANK: a database of annotated two-dimensional gel electrophoresis patterns of biological systems with completed genomes.
    Nucleic Acids Res, 2004, 32, D582-5 doi url
  • Bernardini, G.; Renzone, G.; Comanducci, M.; Mini, R.; Arena, S.; D'Ambrosio, C.; Bambini, S.; Trabalzini, L.; Grandi, G.; Martelli, P.; Achtman, M.; Scaloni, A.; Ratti, G. & Santucci, A.
    Proteome analysis of Neisseria meningitidis serogroup A.
    Proteomics, 2004, 4, 2893-926 doi url
  • Dalbey, R.E. & Chen, M.
    Sec-translocase mediated membrane protein biogenesis.
    Biochim Biophys Acta, 2004, 1694, 37-53 doi url
  • Pleissner, K.; Eifert, T.; Buettner, S.; Schmidt, F.; Boehme, M.; Meyer, T.F.; Kaufmann, S.H.E. & Jungblut, P.R.
    Web-accessible proteome databases for microbial research.
    Proteomics, 2004, 4, 1305-1313 doi url
  • Babnigg, G. & Giometti, C.S.
    ProteomeWeb: a web-based interface for the display and interrogation of proteomes.
    Proteomics, 2003, 3, 584-600 doi url
  • Medjahed, D.; Smythers, G.W.; Powell, D.A.; Stephens, R.M.; Lemkin, P.F. & Munroe, D.J.
    VIRTUAL2D: A web-accessible predictive database for proteomics analysis.
    Proteomics, 2003, 3, 129-38 doi url
  • Krogh, A.; Larsson, B.; von Heijne, G. & Sonnhammer, E.L.
    Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes.
    J Mol Biol, 2001, 305, 567-80 doi url
  • Nielsen, H.; Engelbrecht, J.; Brunak, S. & von Heijne, G.
    Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites.
    Protein Eng, 1997, 10, 1-6
  • Rapoport, T.A.; Jungnickel, B. & Kutay, U.
    Protein transport across the eukaryotic endoplasmic reticulum and bacterial inner membranes.
    Annu Rev Biochem, 1996, 65, 271-303 doi url
  • Bjellqvist, B.; Basse, B.; Olsen, E. & Celis, J.E.
    Reference points for comparisons of two-dimensional maps of proteins from different human cell types defined in a pH scale where isoelectric points correlate with polypeptide compositions.
    Electrophoresis, 1994, 15, 529-39
  • Bjellqvist, B.; Hughes, G.J.; Pasquali, C.; Paquet, N.; Ravier, F.; Sanchez, J.C.; Frutiger, S. & Hochstrasser, D.
    The focusing positions of polypeptides in immobilized pH gradients can be predicted from their amino acid sequences.
    Electrophoresis, 1993, 14, 1023-31
Other bioinformatic tools from our team:

PrediSi - Prediction of Signalpeptides

PRODORIC - Prokaryotic Database of Gene Regulation and Regulatory Networks

JCat - calculation of Codon Adaptation Indices

 © 2006 by Karsten Hiller •  Institute for Microbiology •  Technical University of Braunschweig •  contact: k.hiller@tu-bs.de